PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000358.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 152aa    MW: 17583 Da    PI: 8.7091
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000358.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-057092123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C +Cgk F  + + ++H +++
  Itr_sc000358.1_g00003.1 70 FMCRKCGKAFAVRGDWRTHEKNC 92
                             89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.64E-75690No hitNo description
Gene3DG3DSA:3.30.160.603.1E-66690IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.8087090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MKMHMWGHGS QYRKGPESLR GTQPTAMLRL PCYCCAAGCR NNIDHPRAKP LKDFRTLQTH  60
YKRKHGIKPF MCRKCGKAFA VRGDWRTHEK NCGKLWYCTC GSDFKHKRSL KDHIKAFGNG  120
HAAYGIDCFD EEDEPASEIE QDNEHEDQIN QP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0711041e-105AK071104.1 Oryza sativa Japonica Group cDNA clone:J023078D20, full insert sequence.
GenBankAP0036261e-105AP003626.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0429G06.
GenBankAP0037111e-105AP003711.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0417G12.
GenBankAP0149621e-105AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780788.11e-104PREDICTED: protein TRANSPARENT TESTA 1-like
RefseqXP_016504595.11e-104PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-101ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLK4D9181e-103K4D918_SOLLC; Uncharacterized protein
TrEMBLM1B2851e-102M1B285_SOLTU; Uncharacterized protein
STRINGSolyc11g062060.1.11e-103(Solanum lycopersicum)
STRINGPGSC0003DMT4000354081e-102(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-103C2H2 family protein